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# Second, the files are imported one-by-one using a for loop where the original names are assigned to the generated data frames with the 'assign' function.'origin' vector kebra nagast portugues pdf of length ncol(data) with origin labels of samples.# # 2010 chevy silverado lt owners manual Spot type file # # # Control spot information can be added to the RGList object with the spot type file (SpotTypes.# Inconsistent spreads of hinges and whiskers between arrays can indicate normalization issues.'cl' vector of length ncol(data) with class lables of samples/treatments.#1 NEW york times bestseller AND THE perfect holiday gift A Reese Witherspoon Book Club Pick Beautifully written and incredibly funny.# Basic usage of cindex function # source # Imports the cindex function for computing the Jaccard Index or the Rand Index.# Print out row labels in same order as shown in the heatmap.# To retrieve the indices for all duplicates, use the following 'in' function.# Export and other utilities # OLexport - trix(unlist(sapply(OLlist54, paste, collapse" write.# GO term enrichment analysis with GOstats # # Example of how to test a sample set of probe set keys for over-representation of GO terms using a hypergeometric distribution # test with the function hyperGTest.# Usually, one should use at least 1000 repetitions.# Change plotting parameters ttings # Shows global plotting parameters in a set of sample plots.# Imports the colAg function.# The argument 'Nannot' defines the minimum number of direct annotations per GO node from the sample set to determine # the number of tested hypotheses for the p-value adjustment.
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# Clustering cluster results # clVlist - lapply(3:12, function(x) clara(y1:30, kx)clustering names(clVlist) - paste k 3:12) d - sapply(names(clVlist function(x) sapply(names(clVlist function(y) cindex(clV1clVlisty, clV2clVlistx, method"jaccard 3) hv - hclust(as.
# With the argument setting '1 row-wise iterations are performed and with '2' column-wise iterations.
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